Introduction to Bioinformatics with R by Edward Curry

Author:Edward Curry
Language: eng
Format: epub
Publisher: CRC Press
Published: 2020-10-08T00:00:00+00:00

Bibliography

[1]J Zhu et al, “The UCSC Cancer Genomics Browser,” Nature Methods 6:239–240 (2009).

[2]DW Huang & BT Sherman & RA Lempicki, “Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources,” Nature Protocols 4:44–57 (2009).

1I have called it this because the protein expression data in TCGA comes from a Reverse Phase Proteomics Array (RPPA) platform, from MD Anderson.

2Note that if you do not have access priviliges to install packages, for whatever reason, you can tell R to use your current (writeable) directory instead by entering the command .libPaths(getwd()). The ‘.’ here before libPaths is essential!

3Why 100? It’s more or less completely arbitrary, although it is usually enough to give a signal in function enrichment analysis

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